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Ketone body metabolism disorders (HMG-CoA lyase, SCOT, beta-ketothiolase)

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A 9-month-old is brought in during a viral illness with vomiting and lethargy. Glucose is 32 mg/dL and there is a severe metabolic acidosis. Urine ketones are negative. Ammonia is mildly elevated. Urine organic acids show 3-hydroxy-3-methylglutaric acid.

Ketone bodies are made in the liver during fasting and used by brain and muscle. A defect can sit on either side, and the two sides look opposite at the bedside.

Cannot MAKE ketones (ketogenesis)Cannot USE ketones (ketolysis)
DisorderHMG-CoA lyase deficiencySCOT deficiency, beta-ketothiolase deficiency
GeneHMGCLOXCT1 (SCOT), ACAT1 (beta-ketothiolase)
Fasting pictureHypoketotic hypoglycemiaSevere ketoacidosis
Ketones when unwellInappropriately absentMassively elevated
ResemblesFatty acid oxidation defectDiabetic ketoacidosis without hyperglycemia
  • Autosomal recessive, HMGCL. The enzyme sits at the junction of leucine catabolism and ketone body synthesis, so the disorder is both an organic acidemia and a ketogenesis defect
  • Presents in infancy with hypoketotic hypoglycemia, metabolic acidosis, hyperammonemia, vomiting and lethargy, usually triggered by fasting or intercurrent illness
  • Hepatomegaly, and a Reye-like picture that is often the initial working diagnosis
  • Urine organic acids show 3-hydroxy-3-methylglutaric acid, the specific marker, along with 3-methylglutaconic and 3-hydroxyisovaleric acids
  • Notably no ketosis despite hypoglycemia, which is what makes it mimic a fatty acid oxidation defect. Acylcarnitines separate them
  • Relatively common in Saudi Arabia and Portugal
  • Autosomal recessive, OXCT1 (succinyl-CoA:3-oxoacid CoA transferase), the first committed step of ketone utilisation
  • Severe ketoacidotic crises, often starting in the neonatal period or infancy, precipitated by fasting or illness
  • In severe cases there is permanent ketosis, present even when well and fed, which is close to pathognomonic
  • Urine organic acids show ketosis without a specific abnormal metabolite, so the diagnosis rests on the clinical pattern plus OXCT1 sequencing
  • Development is normal between crises
  • Autosomal recessive, ACAT1 (mitochondrial acetoacetyl-CoA thiolase, also called T2 deficiency)
  • Sits in both isoleucine catabolism and ketolysis, so it behaves as an organic acidemia and a ketone utilisation defect
  • Intermittent severe ketoacidotic episodes with normal health in between; the first episode is typically between 6 and 24 months
  • Urine organic acids show 2-methyl-3-hydroxybutyric acid and tiglylglycine, which is the specific pattern
  • Detectable on newborn screening through elevated C5:1 and C5-OH acylcarnitines

Shared across all three:

  • Avoid fasting, with an age-appropriate maximum fasting interval and a written sick-day plan. This is the single most important intervention
  • Emergency regimen with intravenous dextrose at the first sign of illness or poor intake, before decompensation
  • Treat acidosis; give bicarbonate for severe acidosis in the ketolysis defects
  • Mild protein restriction in HMG-CoA lyase and beta-ketothiolase deficiency, both of which involve branched-chain amino acid catabolism
  • Carnitine supplementation where deficiency is documented
  • Long-term outcome is good when crises are prevented, and poor when they are not, because the damage is done by the metabolic crises themselves

Cannot make them, cannot use them.

  • Cannot MAKE ketones and you are hypoglycemic with no ketones in the urine when there should be plenty. That is HMG-CoA lyase deficiency.
  • Cannot USE ketones and you are drowning in them, with ketoacidosis and a normal or low glucose. That is SCOT or beta-ketothiolase deficiency.
  • Hypoglycemia with absent ketones has a short differential: fatty acid oxidation defects, hyperinsulinism, and HMG-CoA lyase deficiency. Acylcarnitines and urine organic acids separate them quickly.
  • Ketoacidosis with a normal glucose in a well-grown toddler is not diabetes. Persistent or disproportionate ketosis should prompt urine organic acids and consideration of a ketolysis defect.
  • Ketosis that never goes away, even when well, points at SCOT deficiency specifically.